PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08860.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 315aa    MW: 35416.9 Da    PI: 4.5341
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08860.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1980133356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq++ Le+ F +++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  KHN08860.1  80 KKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 133
                 56689************************************************9 PP
2HD-ZIP_I/II127.46.1e-4179171193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ ++L +e+ +L++e+++
   KHN08860.1  79 EKKRRLSVEQVRFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKVKLKAEVAR 171
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-2059137IPR009057Homeodomain-like
PROSITE profilePS5007117.52475135IPR001356Homeobox domain
SMARTSM003891.9E-1978139IPR001356Homeobox domain
PfamPF000462.5E-1680133IPR001356Homeobox domain
CDDcd000869.97E-1980136No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1982143IPR009057Homeodomain-like
PRINTSPR000311.8E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000311.8E-5115131IPR000047Helix-turn-helix motif
PfamPF021831.4E-15135176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAGGSVFCST SSSSSNLTTT TQPPLDSLFL SASSPFLGSR SIVSFGDVQG GKGCNDSFFS  60
SYDEHGDHED MDEYFHQPEK KRRLSVEQVR FLEKSFDEEN KLEPERKIRL AKELGLQPRQ  120
VAIWFQNRRA RWKTKQMEKD YDSLQASYND LKANYDNLLR EKVKLKAEVA RLTEKVLGRK  180
KNEGNLEQAE TNGLQEPLQK SLADSASEGE GSKVSIGACK QEDINSAKSD IFDSSESPHC  240
TDGIHSALLE TGDSSYVFEP DQSDVSQDEE DNLSKTLLPH YIFPKLEDVD YSDLPHGSCN  300
FGIPEEDQAI WSWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8236710.0AY823671.1 Glycine max HDZip I protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229134.10.0homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A0B2PI540.0A0A0B2PI54_GLYSO; Homeobox-leucine zipper protein HAT5
STRINGGLYMA06G20230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-46homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]