PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08890.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 213aa    MW: 23989.1 Da    PI: 8.8597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08890.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-133884354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+E+rRR+riNs ++ Lr+llP +      K +Ka+ L k+v+ +k+L
  KHN08890.1 38 KNHKEAEKRRRERINSHLDHLRTLLPCN-----SKTDKASLLAKVVQRVKEL 84
                58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4593584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-113887No hitNo description
PfamPF000106.5E-113884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-143993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-143995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-124190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.8E-4128181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MHHPLSTNSS NNTNYYPFHL SQITETPSHH DRALAAMKNH KEAEKRRRER INSHLDHLRT  60
LLPCNSKTDK ASLLAKVVQR VKELKQQTSE ITELETVPSE TDEITVLATT GGDYASGGDD  120
GRLIFKASLC CEDRSDLIPD LIEILNSLHL KTLKAEMATL GGRTRNVLVV AADKEHSIES  180
IHFLQNSLRS ILDRSSSGDR SKRRRGLDRR LMS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554115.11e-153transcription factor bHLH106
SwissprotO806744e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0B2PI841e-154A0A0B2PI84_GLYSO; Transcription factor bHLH106
STRINGGLYMA19G30910.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]