PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08980.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 351aa    MW: 37928.4 Da    PI: 4.4247
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08980.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16201237135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  KHN08980.1 201 CHHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 237
                 *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.6466297IPR010399Tify domain
SMARTSM009791.0E-66297IPR010399Tify domain
PfamPF062004.1E-96596IPR010399Tify domain
PROSITE profilePS5101712.719130172IPR010402CCT domain
PfamPF062037.0E-15130171IPR010402CCT domain
SMARTSM004014.9E-11195248IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.735195251IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.4E-15199242IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-11199246No hitNo description
CDDcd002027.37E-16200247No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003208.0E-14201237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MATVNPQPLQ FEDPAIPVDD DDDDDDGGDD DAMDDLEDAN VNSVNVAANA AASVNHEAVV  60
AMPSRTSELT LSFEGEVYVF PAITPQKVQA VLLLLGGRDV QASVPAVEQP FDQSNRGMGD  120
TPKRSNLSRR IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKESPGSSN  180
WDSAQSSGQD GTSHSESVRR CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD  240
LSKGGRSLSV EQSDLDTPID VKPTSVLEGE LPGIHDEQGS SEDPSKSNAA DGSSNHAVNP  300
SDEELPETAE HFTNVLPLGI GHSSTNENEQ EPLVELSNPS DTDIDIPGNF D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0934500.0BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028235682.10.0GATA transcription factor 24-like
SwissprotQ8GXL72e-70GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445K7B90.0A0A445K7B9_GLYSO; GATA transcription factor 24 isoform A
STRINGGLYMA06G10290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-71ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]