PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09309.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 59aa    MW: 6422.39 Da    PI: 10.4887
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09309.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.25e-13159319374
        GRAS 319 leeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++aGF+  pls+++a+++k+ l + +   + g +v+ee+g +++gW++r+L+++SaWr
  KHN09309.1   1 MSMAGFELKPLSQSMAESIKSRLTTANnrvNSGLTVKEENGGICFGWMGRTLTVASAWR 59 
                 899*****************9998776445679*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.7E-10159IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MSMAGFELKP LSQSMAESIK SRLTTANNRV NSGLTVKEEN GGICFGWMGR TLTVASAWR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548164.12e-33scarecrow-like protein 8
RefseqXP_028206667.12e-33scarecrow-like protein 8
SwissprotQ9FYR71e-22SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0B2PNN87e-35A0A0B2PNN8_GLYSO; Scarecrow-like protein 8
TrEMBLA0A445GK604e-32A0A445GK60_GLYSO; Scarecrow-like protein 8
TrEMBLI1MPJ54e-32I1MPJ5_SOYBN; Uncharacterized protein
STRINGGLYMA16G29900.17e-33(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.15e-25SCARECROW-like 8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]