PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09325.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 690aa    MW: 76936.3 Da    PI: 8.0274
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09325.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0581102223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 kC +C++ F ++ n++rHir+H
  KHN09325.1  81 KCDKCSREFCSPVNYRRHIRVH 102
                 7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.008980102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24280107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MPIAKLKASG TPDVMKTEDR IDTLIRQAIG KEPFIPFPRA SESPVQWIQL LHALDPQGVS  60
NTFSEFPGWP LFSPLKVQLQ KCDKCSREFC SPVNYRRHIR VHHRLKKLDK DFTKTKDLLG  120
AYWDKLSVEE AKEVVSFENV LLEEVPASSI LKSLTTFIQN QGFYSFPQYY LMAGAALLDI  180
VQSKPSCFPI SSQELFSILD DASENTCLCG TAESMQRYVF DGEAGKIGLE PKNLVACTSF  240
LLEQKLVKAW LADKDAEALR CQKQLVEEEE AAQKRQAEIL ERKRQKKLRQ KEQKAREQRH  300
QAEAEIKGDI DSTVKALSPA EASLDTYNFE AHNPSTFSDN AASPVPFQCP DTSEEINGDI  360
HSESETITDQ DIVRQSAHGH KHKRQAVARQ QGLPKLQWAV ANGLHTKQNS PVSKLEINQK  420
YGTHCDQKAS SIVNGSKVWT RKSKTEIDKV VLKTIKEKEP DQVKNQEVLI GSISVNLSNC  480
SQSEGNMVAS QKDFIVENMG KQNISRDKPM KTDLAMGDNN RSTVKFWRPV SRLETKDPLP  540
VQSGGTKVDA VHENGQNLSG PSSLRVCTAA GGDIGFAKYF SHTEDKADPG SFWFDIQAAK  600
AFLAQRWKEA ISSEHVTLVI CPDSEPPGCE EIQDLKTAAC QSSDMDGCDI VANADKRLPA  660
TSKVAKSKPR LKKSEKGTKI KYIPKQKTNT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287ERKRQKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599567.10.0uncharacterized protein LOC100809067
RefseqXP_028207759.10.0uncharacterized protein LOC114390984
TrEMBLA0A0B2PJK00.0A0A0B2PJK0_GLYSO; Uncharacterized protein
TrEMBLK7MI400.0K7MI40_SOYBN; Uncharacterized protein
STRINGGLYMA16G30100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45172739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-124C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]