PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09599.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 234aa    MW: 26456.7 Da    PI: 6.359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09599.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.5e-08124164954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A+ Y+k L
  KHN09599.1 124 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAILYVKFL 164
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.481115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-13120173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11121174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.75E-10121169No hitNo description
PfamPF000102.5E-5125164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDTNQNITTT GNHENMGRDE HNNIILHDHH HHNQIPTPHY NHHPLHIVQP SSNVAPSFVS  60
DVLGVVHFEE EDEDEEEVEE ELGAMKEMMY KMAVMQPVDI DPASVRKPKR RNVRISDDPQ  120
SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAILY VKFLKRQIRL LQSTSSPLIN  180
CTGAAPNSDY WPFAPNIFHS SITNTNASMD IPVIGMEFNT RGHGHAGDAS SIHL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581762.11e-130transcription factor HEC3
TrEMBLA0A0R0JHC21e-174A0A0R0JHC2_SOYBN; Uncharacterized protein
TrEMBLA0A445KA161e-174A0A445KA16_GLYSO; Transcription factor IND
STRINGGLYMA06G15730.21e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.15e-47bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]