PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09705.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LFY
Protein Properties Length: 359aa    MW: 40792.7 Da    PI: 6.6776
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09705.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY6151.4e-187534546386
     FLO_LFY  46 rklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk..llsedeet.al 141
                 r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkdeeldd+m+sls+ifr+dllvGeryGikaavraerrr+e+++ +++ ++  lls+d++t al
  KHN09705.1   5 RELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNnnLLSADTTTnAL 103
                 45779************************************************************************98666554344778887766** PP

     FLO_LFY 142 dalsqeglseepvqe.ekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepg 239
                 dalsqeglseepv + ekea+gsgg++  ++e+v+a+e+++++++++++  + k ++ +++ +ee ed+e e++++++ ++ +g erqrehPfivtepg
  KHN09705.1 104 DALSQEGLSEEPVMQrEKEAVGSGGGS--TWEVVVAAEERRKQQRRRRT--RMKTNNLHHEDNEELEDDEGEQNDEGNINTGGGCERQREHPFIVTEPG 198
                 ************999677788888877..99999988544333333332..2222222222222223333333333444566688************** PP

     FLO_LFY 240 evargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrq 338
                 evargkknGLDYLf+LyeqCrefL+qvq+iak+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrrafkergenvGawrq
  KHN09705.1 199 EVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQ 297
                 *************************************************************************************************** PP

     FLO_LFY 339 acykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                 acykplvaiaarqgwdida+fnahprLsiWYvPtkLrqLCh+er++a+
  KHN09705.1 298 ACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAA 345
                 ********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.8E-1972345IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
AAAPRELGGL EELFQAYGIR YYTAAKIAEL GFTVSTLVDM KDEELDDMMN SLSQIFRWDL  60
LVGERYGIKA AVRAERRRVE DDDIKRRNNN NNLLSADTTT NALDALSQEG LSEEPVMQRE  120
KEAVGSGGGS TWEVVVAAEE RRKQQRRRRT RMKTNNLHHE DNEELEDDEG EQNDEGNINT  180
GGGCERQREH PFIVTEPGEV ARGKKNGLDY LFHLYEQCRE FLMQVQAIAK DRGEKCPTKV  240
TNQVFRYAKK AGASYINKPK MRHYVHCYAL HCLDEEVSNE LRRAFKERGE NVGAWRQACY  300
KPLVAIAARQ GWDIDAIFNA HPRLSIWYVP TKLRQLCHAE RNSAAASSSV SAGSAHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1121833532172PROTEIN LEAFY
2vy2_A1e-1121833532172PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4488100.0DQ448810.1 Glycine max LEAFY-like protein (LFY) mRNA, LFY-1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526918.20.0protein UNIFOLIATA isoform X2
RefseqXP_028236681.10.0protein UNIFOLIATA-like
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A445KAL00.0A0A445KAL0_GLYSO; Protein UNIFOLIATA
TrEMBLI1KBW80.0I1KBW8_SOYBN; Uncharacterized protein
STRINGGLYMA06G17170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-144floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]