PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09738.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20859 Da    PI: 9.5234
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09738.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.9e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtfskRrng+lKKA+ELSvLC+aeva+iifs++g+lye+ss
  KHN09738.1  9 KRIENETSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSTRGRLYEFSS 59
                79***********************************************96 PP
2K-box64.44e-22591233498
       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + R+llG++L+++s+ eLqqLe+qLe+sl kiR++Kn+l++e ie+l++ ek l e nk+Lr+++
  KHN09738.1  59 SSRKLLGDELDKCSIDELQQLENQLERSLDKIRARKNQLFRERIENLKQEEKCLLEVNKRLREQY 123
                 57************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002658.20E-34360No hitNo description
SuperFamilySSF554553.53E-28369IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.03839131IPR002487Transcription factor, K-box
PfamPF014862.9E-2059123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVRGKTQMKR IENETSRQVT FSKRRNGLLK KAFELSVLCE AEVALIIFST RGRLYEFSSS  60
RKLLGDELDK CSIDELQQLE NQLERSLDKI RARKNQLFRE RIENLKQEEK CLLEVNKRLR  120
EQYRIDRQRC LSDQDAELVT EKEAEEVETE LFIGRPERRM PLKLKSATHS AHKYIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17160160MEF2C
5f28_B5e-17160160MEF2C
5f28_C5e-17160160MEF2C
5f28_D5e-17160160MEF2C
6byy_A5e-17160160MEF2 CHIMERA
6byy_B5e-17160160MEF2 CHIMERA
6byy_C5e-17160160MEF2 CHIMERA
6byy_D5e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09738.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992181e-143BT099218.1 Soybean clone JCVI-FLGm-13H19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028209688.11e-104agamous-like MADS-box protein AGL19 isoform X2
SwissprotO827433e-53AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A445G6931e-103A0A445G693_GLYSO; Agamous-like MADS-box protein AGL19
STRINGGLYMA05G03660.81e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-52AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]