PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN09825.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 263aa    MW: 29235.1 Da    PI: 9.4517
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN09825.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029426123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C++sFs+   L  H++ H
  KHN09825.1  4 HKCKLCSRSFSNGRALGGHMKAH 26
                79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.04E-5326No hitNo description
PfamPF139127.5E-8328IPR007087Zinc finger, C2H2
SMARTSM003550.028426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.04E-5155179No hitNo description
SMARTSM00355160160180IPR015880Zinc finger, C2H2-like
PfamPF139120.004160179IPR007087Zinc finger, C2H2
SuperFamilySSF576677.52E-5200225No hitNo description
PfamPF139121.6E-11201225IPR007087Zinc finger, C2H2
SMARTSM003551.2202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411202224IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDRHKCKLCS RSFSNGRALG GHMKAHLASL PLPLPPKLHS CFSSSDSEQE QSLRENPKKT  60
LRILDPEDRE SETESNKNPT RQRSKRNWKS TMPKLSLGHP EAEPLSSVSD TSPEEDLAMC  120
LMMLSRDTWQ EHKLANAGPP KTRCSSGSEI KLKNKVRSKH LCHACHKSFR SSRALGSHRT  180
LCSPRQEAQN NSIISNNNIK VFECPFCYKL FGSGQALGGH KRSHLIPSSS STVNHSVKLK  240
QSFIDLNLPA PAEDDDLSVV SDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085RQRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN09825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671260.0KC967126.1 Glycine max C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304590.20.0zinc finger protein ZAT4-like
RefseqXP_028209661.10.0zinc finger protein ZAT4-like
TrEMBLA0A445G6N30.0A0A445G6N3_GLYSO; Zinc finger protein ZAT9
TrEMBLI1MV170.0I1MV17_SOYBN; Uncharacterized protein
STRINGGLYMA17G15140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-41C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]