PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN09987.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 141aa MW: 16421.1 Da PI: 7.4671

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN09987.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.9	6.1e-43	64	139	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+adlseak+yhrrhkvCe h+kap+v ++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk + KHN09987.1 64 CQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHVLSEFDDSKRSCRTRLAGHNERRRKYA 139 *************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	7.9E-55	1	141	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	1.1E-36	56	125	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.282	61	138	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.61E-39	62	139	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.3E-34	64	137	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDTSRSEGKR VMRYKEEDDD NDDEEEEVVS EMGFEEDGRR NKRVIRDLYG KRGSKGGGSI 60 TPSCQVDNCD ADLSEAKQYH RRHKVCEYHA KAPSVHMAGL QQRFCQQCSR FHVLSEFDDS 120 KRSCRTRLAG HNERRRKYAV D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-37	53	137	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	137	ERRRKY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN09987.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092024	0.0	BT092024.1 Soybean clone JCVI-FLGm-9K12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028189111.1	1e-100	squamosa promoter-binding-like protein 3
Swissprot	Q38741	1e-45	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A0B2PQV6	4e-99	A0A0B2PQV6_GLYSO; Squamosa promoter-binding-like protein
STRING	GLYMA13G24590.2	6e-75	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-42	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]