PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10038.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 245aa    MW: 26734.8 Da    PI: 4.7293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10038.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-183383155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  KHN10038.1 33 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 83
                59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.8383491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303493IPR001471AP2/ERF domain
PfamPF008472.2E-113483IPR001471AP2/ERF domain
SMARTSM003804.8E-363497IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-203492IPR016177DNA-binding domain
PRINTSPR003675.9E-93546IPR001471AP2/ERF domain
CDDcd000184.19E-163791No hitNo description
PRINTSPR003675.9E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVKSENKIHP EQPSSSSSKP MRPLSSSSDN KKKKYKGVRM RSWGSWVSEI RAPNQKTRIW  60
LGSYSTAEAA ARAYDAALLC LKGSSANLNF PSSSSSSQHY IIPQDTAMMS PKSIQRVAAA  120
AANNFLDNNA IAINNATTPP SPPLASTSSS FVSSPSMSSS SPLDQIDDDV SLLTPFGAYT  180
TTTATTICDE TNESMAMMES WYDLEGLQSP KYVDQMLSGA FFDIDSTQLL DDLYEESDIR  240
LWSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-153198270ATERF1
3gcc_A3e-153198270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10038.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284560.0FJ228456.1 Glycine max AP2 domain-containing transcription factor 4 (AP2-4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239623.11e-180AP2 domain-containing transcription factor 4
RefseqXP_028199966.11e-180ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE41e-46ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0B2PQT41e-179A0A0B2PQT4_GLYSO; Ethylene-responsive transcription factor ERF012
TrEMBLC9WA621e-179C9WA62_SOYBN; AP2 domain-containing transcription factor 4
STRINGGLYMA14G22970.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-28ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]