PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10135.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 217aa    MW: 24399.5 Da    PI: 5.8647
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10135.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.32.9e-0964103140
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 
                 +fYn+YA++vGFs+ + + ++ k +g i++ +f Cs+e  
  KHN10135.1  64 SFYNAYARHVGFSTHVGQFNRAKPDGPIITWDFACSREVV 103
                 5************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-764105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDVEAVDEGE NSDRPVSENV ETGKGQEQNM TVNLAEREVN NQNGDAYRKP QVGMLFESED  60
AAKSFYNAYA RHVGFSTHVG QFNRAKPDGP IITWDFACSR EVVLTCFKSM TWIISNKNSS  120
SSSKIAVINM KLQDYGKGPL GETEVQFRVT RVTLEPMLRS MTYISQQLNA PVNRVAIINL  180
RLQDTKTTTG QTELKFQVSR DTLGSMLRSV TYIQEQL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10135.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150399e-95AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492215.14e-65protein FAR1-RELATED SEQUENCE 3 isoform X1
RefseqXP_014492216.14e-65protein FAR1-RELATED SEQUENCE 3 isoform X1
SwissprotQ9ZVC93e-44FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A4D6LBR15e-70A0A4D6LBR1_VIGUN; Uncharacterized protein
STRINGGLYMA15G34840.22e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.24e-43FAR1-related sequence 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]