PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10245.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 444aa    MW: 49675.1 Da    PI: 6.9547
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10245.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-541152421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelv++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++e
  KHN10245.1 115 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSeTSE 212
                 79*************************999.89***************99999****************************************986788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 l+g+kktLvfykgrap+gek++Wvmheyr+
  KHN10245.1 213 LIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 242
                 8***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-63110264IPR003441NAC domain
PROSITE profilePS5100560.737115264IPR003441NAC domain
PfamPF023656.0E-28116242IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MALDEAGAIP ILIDLMNDVD EVEEPRDNVV EALVIYYVDP LYHDRVSDTI NVPSFRNIIP  60
QVIVSFPSEP HNLYKPSKLD SRRVCLSMQK EKEAIIKEGT TEIEMEGTRA KEGTLPPGFR  120
FHPTDEELVT CYLVNKISDS NFTGRAITDV DLNKCEPWEL PGKAKMGEKE WYFFSLRDRK  180
YPTGVRTNRA TNTGYWKTTG KDKEIFNSET SELIGMKKTL VFYKGRAPRG EKSNWVMHEY  240
RIHSKSSYRT NRQDEWVVCR VFKKSGGAKK YHSSNHARTV NPYSLEIGPS IMPPPMMQLG  300
DPSAHFLYGR NYMNSAELAE LARVLRGGGS TSSVNLPIQS QLSYPTSSSA GGGGFIISGL  360
NLNLGGGATA TTQPILRPMQ PSPPVHTMAQ VLDVNSSMMT TSSLGAENNV GYGTEVSNNM  420
NSHGNRYMGM DHHCMDLDNY WPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-5511427016171NO APICAL MERISTEM PROTEIN
1ut4_B6e-5511427016171NO APICAL MERISTEM PROTEIN
1ut7_A6e-5511427016171NO APICAL MERISTEM PROTEIN
1ut7_B6e-5511427016171NO APICAL MERISTEM PROTEIN
3swm_A7e-5511427019174NAC domain-containing protein 19
3swm_B7e-5511427019174NAC domain-containing protein 19
3swm_C7e-5511427019174NAC domain-containing protein 19
3swm_D7e-5511427019174NAC domain-containing protein 19
3swp_A7e-5511427019174NAC domain-containing protein 19
3swp_B7e-5511427019174NAC domain-containing protein 19
3swp_C7e-5511427019174NAC domain-containing protein 19
3swp_D7e-5511427019174NAC domain-containing protein 19
4dul_A6e-5511427016171NAC domain-containing protein 19
4dul_B6e-5511427016171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-108AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578207.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_028228167.10.0protein CUP-SHAPED COTYLEDON 3-like isoform X1
TrEMBLA0A445KX790.0A0A445KX79_GLYSO; Protein CUP-SHAPED COTYLEDON 2 isoform B
STRINGGLYMA04G08320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-106NAC domain containing protein 38
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]