PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10555.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 248aa    MW: 28612.2 Da    PI: 9.83
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10555.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.34.9e-081295790
        FAR1  7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                A+e GF  ++ +s +s   +g+       C ++g+ + +kk+    rr++ + ++gC  kl+ k     + w+v+ +   HnHela
  KHN10555.1 12 AHENGFVAVIIRSDTStGSKGRSSFVLIGCERSGEYRCRKKE--FFRRNNGTRKCGCPFKLRGKPVVgGQGWMVKLMWGIHNHELA 95
                9999**99999888882344444555556*********9998..9999****************9998999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-61195IPR004330FAR1 DNA binding domain
PfamPF105511.3E-8208247IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0004491Molecular Functionmethylmalonate-semialdehyde dehydrogenase (acylating) activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
QDDVLQWAQF VAHENGFVAV IIRSDTSTGS KGRSSFVLIG CERSGEYRCR KKEFFRRNNG  60
TRKCGCPFKL RGKPVVGGQG WMVKLMWGIH NHELAKSLVG HPYAGRLTKA EKTLIADMTK  120
SMVKPRNILL TLKEHNANSC TTIKQIYNER SAFRSSIKGS DIEMQHLMKL LEWDQYIHWH  180
RLKDEDVVHC IFWCHPDVVK LVNACNLVFL IDNTYKTNRY RLPLLDFVGV KPTWMTFSAG  240
FAYLEGER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352330.0AC235233.1 Glycine max strain Williams 82 clone GM_WBb0027P13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028242214.11e-157protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0B2PN700.0A0A0B2PN70_GLYSO; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRINGXP_007139082.19e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-10FAR1-related sequence 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]