PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN10694.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 458aa MW: 50320.5 Da PI: 9.4016

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN10694.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.1e-06	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H KHN10694.1 76 FVCEICHKGFPRDQNLQLHKRGH 98 89******************988 PP
2	zf-C2H2	12.3	0.00051	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ KHN10694.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.3E-5	75	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.81E-6	75	98	No hit	No description
PROSITE profile	PS50157	10.429	76	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	76	98	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	117	147	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.2E-4	140	173	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.81E-6	147	172	No hit	No description
SMART	SM00355	170	152	172	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MFPTAISYST SLSEDASVSS GTKVQDLGGL NHGVSSISPQ QQPQKIKKKR SLPGNPDPDA 60 EVIALSPKTL MATNRFVCEI CHKGFPRDQN LQLHKRGHNL PWKLKQRSSK EVKKKAYVCP 120 EPSCVHHNPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR 180 CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLAAAAA ATVTTTTTNP FQSLYLFQTQ 240 QQNFQNHQMT SFNQWDSSQE NPNPSNNIAT TSLHIKPESQ SFHNPTLSSF LQQQQQGQQP 300 NNNNRGMIAS PFGNLHVAAA APATSSYMSA TALLQKAATV GAAAITGPVH LGAGEFGIGT 360 VSQLDPVVLV PDNNNYTRTM FKSSDRLTRD FLGLTADANG GAVDVSTNVK DMLAFTGAVE 420 YHQVQPHRQH HHHHALLKPQ QGFGFLGTTT APETWWNC

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MFPTAISYST SLSEDASVSS GTKVQDLGGL NHGVSSISPQ QQPQKIKKKR SLPGNPDPDA  60
EVIALSPKTL MATNRFVCEI CHKGFPRDQN LQLHKRGHNL PWKLKQRSSK EVKKKAYVCP  120
EPSCVHHNPS RALGDLTGIK KHFCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLAAAAA ATVTTTTTNP FQSLYLFQTQ  240
QQNFQNHQMT SFNQWDSSQE NPNPSNNIAT TSLHIKPESQ SFHNPTLSSF LQQQQQGQQP  300
NNNNRGMIAS PFGNLHVAAA APATSSYMSA TALLQKAATV GAAAITGPVH LGAGEFGIGT  360
VSQLDPVVLV PDNNNYTRTM FKSSDRLTRD FLGLTADANG GAVDVSTNVK DMLAFTGAVE  420
YHQVQPHRQH HHHHALLKPQ QGFGFLGTTT APETWWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	148	212	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-36	148	212	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN10694.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-169	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225532.1	0.0	protein indeterminate-domain 12-like
Swissprot	O22759	1e-123	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A445LC68	0.0	A0A445LC68_GLYSO; Protein indeterminate-domain 12
STRING	GLYMA03G31390.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]