PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN10733.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 181aa    MW: 20173 Da    PI: 9.5231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN10733.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.4e-163782351
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                y+GVr ++ +g+++AeIrdp+ ng   r+++g+f +aeeAa a+++a+ 
  KHN10733.1 37 YRGVRSRP-WGKFAAEIRDPTRNG--VRVWIGTFVSAEEAALAYDQAAF 82
                9****999.**********98887..*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.3253694IPR001471AP2/ERF domain
SMARTSM003801.1E-3136100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-273694IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-203695IPR016177DNA-binding domain
CDDcd000188.68E-263793No hitNo description
PfamPF008471.7E-103782IPR001471AP2/ERF domain
PRINTSPR003672.2E-93748IPR001471AP2/ERF domain
PRINTSPR003672.2E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MESQEITSNI TCDGHVEEKY SPPPSLLDGS KREKRTYRGV RSRPWGKFAA EIRDPTRNGV  60
RVWIGTFVSA EEAALAYDQA AFLTRGVLAT LNFSVQVVME SLQDMGFKAL KNDLSPVLAL  120
KRMHVTRTKS RASRSGNKKV KRACGSNGKW DTSTQNLLVL EDLGPEYLDQ LLSFTCPGSW  180
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-263597466ATERF1
3gcc_A5e-263597466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN10733.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958430.0BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241445.11e-134ethylene-responsive transcription factor 15-like
RefseqXP_028225580.11e-134ethylene-responsive transcription factor 15-like
SwissprotQ8VYM05e-44ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A445LCM71e-132A0A445LCM7_GLYSO; Ethylene-responsive transcription factor 15
TrEMBLC6TE231e-133C6TE23_SOYBN; Uncharacterized protein
STRINGGLYMA03G31920.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-36ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]