PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN10892.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 187aa MW: 21705.2 Da PI: 8.0512

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN10892.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.3	1.2e-39	4	80	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrh+vC++hskap+++v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++ KHN10892.1 4 RCQVEGCHVALVNAKEYHRRHRVCDKHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 80 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	2	66	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.906	2	79	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.45E-37	3	81	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-31	5	78	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MVPRCQVEGC HVALVNAKEY HRRHRVCDKH SKAPKAVVLG LEQRFCQQCS RFHVVSEFDD 60 SKRSCRRRLA GHNERRRKSS HLSVTRNSRQ GCALSLLSSG SSSENWLSHH ADFSTRCSAA 120 LRELIAENRA ALITRQQQLV YDRDWPHVVP HHDAAVEEEE EDFEDLQQQQ QPPEPNYFPQ 180 QHMFPQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	5	78	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN10892.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340412.1	1e-138	LRR receptor kinase-like protein
Refseq	XP_028225093.1	1e-138	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	2e-50	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	2e-50	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A445LBI8	1e-136	A0A445LBI8_GLYSO; Squamosa promoter-binding-like protein 7 isoform A
TrEMBL	K7KEH7	1e-136	K7KEH7_SOYBN; Uncharacterized protein
STRING	GLYMA03G27195.1	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9613	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	8e-37	squamosa promoter binding protein-like 9

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]