PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11197.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 103aa    MW: 11564.5 Da    PI: 10.4347
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11197.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.76.7e-156631875
       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75
                ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++
  KHN11197.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMN 63
                5789*****************************************9999888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.3E-25368IPR009072Histone-fold
SuperFamilySSF471135.83E-15468IPR009072Histone-fold
PfamPF008081.3E-18867IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLTNW EGINKQNGSN GKANSCTWCT RAGKTPAKMH MNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-22267570Transcription Regulator NC2 alpha chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946381e-106BT094638.1 Soybean clone JCVI-FLGm-18N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623604.13e-42class 2 transcription repressor NC2 alpha 6 isoform X1
RefseqXP_028204342.13e-42dr1-associated corepressor-like isoform X1
SwissprotA0JPP17e-21NC2A_RAT; Dr1-associated corepressor
SwissprotQ149196e-21NC2A_HUMAN; Dr1-associated corepressor
SwissprotQ2YDP37e-21NC2A_BOVIN; Dr1-associated corepressor
TrEMBLA0A0B2PUJ11e-71A0A0B2PUJ1_GLYSO; Dr1-associated corepressor
STRINGXP_010067677.13e-40(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-41nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]