PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11249.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 135aa    MW: 15964.5 Da    PI: 10.3123
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11249.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer62.96.4e-20452357
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                  v+YkeC +NhAa+ G   +DGC E++ +      ++ l Ca CgCHRnFHR+++
   KHN11249.1  4 VVTYKECWHNHAAARGRVIYDGCLEYLVD------QDNLICACCGCHRNFHRKHT 52
                 689************************98......578***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.2E-17552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-15651IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-9750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.68751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.84E-1364131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-1866133IPR009057Homeodomain-like
PROSITE profilePS500719.73470134IPR001356Homeobox domain
TIGRFAMsTIGR015658.3E-1772128IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDEVVTYKEC WHNHAAARGR VIYDGCLEYL VDQDNLICAC CGCHRNFHRK HTIFNGIPET  60
QTLDRVQGMR PKRKKRTTFS SEQRNKLICF AESVGWKPRK DKKNEIQSFC SKMGMTRRMF  120
LIWLSNNRHR AIKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243397.13e-99zinc-finger homeodomain protein 6-like
TrEMBLA0A445JGR46e-98A0A445JGR4_GLYSO; Zinc-finger homeodomain protein 6
STRINGGLYMA08G20170.23e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.17e-24homeobox protein 24
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]