PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN11278.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 530aa MW: 58140.9 Da PI: 8.9077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11278.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KHN11278.1 88 FICEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	12	0.00063	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ KHN11278.1 164 WKCDKCSKKYAVQSDWKAHSKTC 186 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.07E-6	87	110	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	87	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.022	88	110	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	88	110	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.4E-5	88	110	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	129	159	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.6E-4	152	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.07E-6	159	184	No hit	No description
SMART	SM00355	150	164	184	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MEMKGFMFHH QQQQQVVVEE NMSNLTSASG EASAASSGNR TEIGTSYMAQ PPSQTQQSKK 60 KRNLPGNPDP DAEVIALSPK SLLATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT 120 SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK 180 AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITNPLLPP QQQQQQPSSS 240 SHHQMSTLQT QFNPQNNLHA FPLKKEQQSF NVRTEMPPWL GPPAATVVVD HHHHHLSSSS 300 SSIMFSPPHQ ENPNPNPSLG PTLAAYKTVA NPPHMSATAL LQKAAQMGAT MSRSGSSPAM 360 TGPHHHAHVS YSADSASAHF GLNLSSREDT TTSTTTTTTT KTATVFSHGL LSSPLGNKAG 420 AAVSSSAPSL LHDVINSFSV SPSAFEGTPF EDAFIQSSKK LDDDDHHNLY LHDTFSKTSS 480 STGAAGNINE GLTRDFLGLR PLSHTDILTI AGIGNCIHDH QNQSQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MEMKGFMFHH QQQQQVVVEE NMSNLTSASG EASAASSGNR TEIGTSYMAQ PPSQTQQSKK  60
KRNLPGNPDP DAEVIALSPK SLLATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITNPLLPP QQQQQQPSSS  240
SHHQMSTLQT QFNPQNNLHA FPLKKEQQSF NVRTEMPPWL GPPAATVVVD HHHHHLSSSS  300
SSIMFSPPHQ ENPNPNPSLG PTLAAYKTVA NPPHMSATAL LQKAAQMGAT MSRSGSSPAM  360
TGPHHHAHVS YSADSASAHF GLNLSSREDT TTSTTTTTTT KTATVFSHGL LSSPLGNKAG  420
AAVSSSAPSL LHDVINSFSV SPSAFEGTPF EDAFIQSSKK LDDDDHHNLY LHDTFSKTSS  480
STGAAGNINE GLTRDFLGLR PLSHTDILTI AGIGNCIHDH QNQSQKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	160	221	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-35	160	221	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	126	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11278.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	1e-174	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028244387.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-125	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A445JH31	0.0	A0A445JH31_GLYSO; Protein indeterminate-domain 7
STRING	GLYMA08G20520.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-104	indeterminate(ID)-domain 7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]