PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11490.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 539aa    MW: 61057.6 Da    PI: 4.7656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11490.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11307350755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +Er+RR++ N+++ +Lr+l+P  +      Kl+ a+iL  A+eY+k+Lq
  KHN11490.1 307 VAERKRRKKPNDRLYNLRSLVPRiS------KLDRASILGDAIEYVKDLQ 350
                 68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-199155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.68E-12299354No hitNo description
PROSITE profilePS5088815.135300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16303363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-14306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-16306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9307350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.40E-5434498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNIIMQNLVE RLRPLVGLNG WDYCIYWKLS EDQRFLEWLG CCCAGTESNQ NAGEEHIFPV  60
SSVASCRDST YPHPRTKPCD LLSQLSTSIP IDNSGIHAQT LLTNQPNWVN YSNGMDPNIL  120
EETIGTQVLI SVPGGLVELF VTKQVPEDHQ LIDYVINQCI EAVNHSMSFH IDENSMSNMQ  180
SNPLIGDENE GNNNSSDNNH FHPSEHVITM DLRSIAGSFL HDKQTNQEDQ EHEHEHDTYQ  240
KSLMTTTDSQ YVEPLEAKEK QEEDKDLLKN VVGRSDSMSD CSDQNEEEED GKYRRRNGKG  300
NQSKNLVAER KRRKKPNDRL YNLRSLVPRI SKLDRASILG DAIEYVKDLQ KQVKELQDEL  360
EENADTESNC MNCVSELGPN AEHDKAQTGL HVGTSGNGYV SKQKQEGTTV IDKQTQQMEP  420
QVEVALIDGN EYFVKVFCEH RPGGFVKLME ALNTIGMDVV HATITSHTGL VSNVFKVEKK  480
DSETVEAEDV RDSLLELMRN RYRGWTHEMT ATSGNSVESD QHQLHNHNQM GAYPHEFHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293314RRRNGKGNQSKNLVAERKRRKK
2308315ERKRRKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-129AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983204.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A0R0ELN40.0A0A0R0ELN4_SOYBN; Uncharacterized protein
TrEMBLA0A445F3I60.0A0A445F3I6_GLYSO; Transcription factor ABORTED MICROSPORES
STRINGGLYMA20G24170.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-138bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]