PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN11572.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 230aa MW: 26232.7 Da PI: 9.5391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11572.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.8e-19	71	125	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k KHN11572.1 71 RKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 125 78889************************************************98 PP
2	HD-ZIP_I/II	127.8	4.6e-41	71	160	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+een+rL+kev+eLr +l KHN11572.1 71 RKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEENRRLHKEVQELR-AL 160 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-19	55	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-20	57	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.799	67	127	IPR001356	Homeobox domain
SMART	SM00389	2.1E-16	69	131	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-17	71	125	IPR001356	Homeobox domain
CDD	cd00086	4.26E-16	71	128	No hit	No description
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
SMART	SM00340	4.0E-26	127	170	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.9E-12	127	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MGEKDDDFGL SLSLSLGRVN QQQQQPPPLN HMHQPQQLQT VPMNHNKTLF GDLSQLPGGG 60 DDDGGGSDAA RKKLRLTKEQ SMVLEETFKE HSTLNPKRKQ ALAEELNLKP RQVEVWFQNR 120 RARTKLKQTE VDCEYLKRCY ENLTEENRRL HKEVQELRAL KLSPQMYMHM NPPTTLTMCP 180 SCERTHSFAS SSTATVHSPA TSSNRKLFGT NIRLPVSFNT RPFEGPIPRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11572.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235892	1e-161	AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028179630.1	1e-142	homeobox-leucine zipper protein ATHB-4-like isoform X1
Swissprot	P46602	1e-71	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A445J5G7	1e-141	A0A445J5G7_GLYSO; Homeobox-leucine zipper protein HAT3
STRING	GLYMA18G48880.1	1e-119	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-69	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]