PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11674.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 285aa    MW: 31878 Da    PI: 9.824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11674.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001164186123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cgk+F +   L  H  +H
  KHN11674.1 164 FQCKRCGKTFQSYQALGGHKANH 186
                 89********9988888887776 PP
2zf-C2H217.51.2e-05216238123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C+k+F++   L  H ++H
  KHN11674.1 216 FECPYCSKVFKSARALGGHKKVH 238
                 89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.97164191IPR007087Zinc finger, C2H2
SMARTSM003550.089164186IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-11164188IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-10164238No hitNo description
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-4212238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-8215238IPR007087Zinc finger, C2H2
SMARTSM003550.0019216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887216243IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGGHMRSHFA KLPIPPKPKT KNQALDNSTE LTHLPTQSAS PLTSYPQKQP SQNFRSLKHN  60
VFAFLANSNR ENESRSYPKN PTRKRSKCHR RFIPAAEMNA EAEPKQVSSK LDSLIAEEAA  120
WTLLMLSRDK WPESKETKKQ KMKGKDGENG CNDLLVQTQS RAKFQCKRCG KTFQSYQALG  180
GHKANHKKNE SICQEGGDSN DDGSDKNSVI VDEKVFECPY CSKVFKSARA LGGHKKVHFS  240
KTIIANAQTT ANEFGGRLVV DLNFPAPRED EEVSHIEFLA AFGEV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214422.11e-115zinc finger protein ZAT9
TrEMBLA0A445J4Y50.0A0A445J4Y5_GLYSO; Zinc finger protein ZAT9
STRINGGLYMA09G36450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1538968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-36C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]