PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11720.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 706aa    MW: 76481.6 Da    PI: 6.1697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11720.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07229249526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C +far G+Ck G +C+F Hg
  KHN11720.1 229 PCLYFAR-GYCKNGTSCRFLHG 249
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.065224251IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-4226250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5227249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4228249IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5229249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MDGYEATRIV FSRIQNLDPE NASKIMGVLL LQDHGEKEMI RLAFGPEALV HSVILKARKE  60
LGLPSNSPPT PSTPPSPSPF LSRQNSTSSR LSGINIPPAL TIPNPSSWPT MSDDLMSPNH  120
LVVGSSTSSS SLPYYANGGS DPIDDFQLQD QLSFLNDGSP TSTAFAHKTN PDLFYPTNNS  180
DLSSSPTTAV DPTLFPSYGW GGSIHRRSCS VNDACLGSED PSSGLGWKPC LYFARGYCKN  240
GTSCRFLHGG IGDADGGGAA AMVGSPGKIE MMEQCHELLR SKSVQQQRLA AASQLMASST  300
FPYSPKSMNF LLQQQQNDTQ RVAAAALMMS EDLHKFGRSR LERNDFSLNS PVMVNPASRQ  360
IYLTFPADST FREEDVSNYF SPRREDPIPA EANVWFVTFV YPETVKLILS KGNPHFVCDA  420
RVLVKPYKEK GKVPDKYRHP PPLSTLMKQQ QQVDRGDFSP CGTPTGLDAR DQFDLQLGGR  480
MLYNTQDMLW RRKLEEQADL QQALELQSRR LMGLQLLDIK KHHQRALSTG SPIPSPTHSP  540
NMFNQNIVPS FHINSESPKE SGSTSAPAST ASVSAGQQPV NIAIGKEVVV NGENGYNEGN  600
GKQNSSHDDC DLQECLEHNL PDSPFASPTK ADGDFMVAFS NGSNEAIDAD GLAASANSKF  660
GTSTLLPAAS ALDMGTFKSF NCQIPRFSSG HGTIGMFAGT GGPIGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-176AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247536.10.0zinc finger CCCH domain-containing protein 53-like isoform X1
RefseqXP_028247537.10.0zinc finger CCCH domain-containing protein 53-like isoform X1
SwissprotQ0D3J91e-156C3H53_ORYSJ; Zinc finger CCCH domain-containing protein 53
TrEMBLA0A445J4Q10.0A0A445J4Q1_GLYSO; Zinc finger CCCH domain-containing protein 53 isoform B
STRINGGLYMA09G35980.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]