PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11729.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 317aa    MW: 35937.6 Da    PI: 7.5348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11729.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS85.11.1e-26111401130
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lL +c++  + g+++ a  +L +ls+las+dgd+mqR+a+yf eALa  +++++ s++ k l+  +t +  + e+  + klf++  P++k++h ++
  KHN11729.1  11 LINLLNDCVRLTELGNFNDAYIALYHLSQLASSDGDSMQRVATYFIEALAYcQVVKNLSGVPKVLHLVKTLS--TPEQQLVKKLFFDFYPFIKIAHTIT 107
                 5799*********************************************96478889999999998777763..667777899**************** PP

        GRAS  99 NqaIleavegeervHiiDfdisq.GlQWpaLlq 130
                 NqaI ea++ge+ + ++D++ s+  lQW +L++
  KHN11729.1 108 NQAIIEAMKGETSINVLDLSPSYnALQWTNLMN 140
                 ********************886379*****96 PP
2GRAS120.32.4e-37140313185315
        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll..............................................desvsleserdevLklvkslsPk 237
                 +le+l++e+L +k+gE la+++vlqlh+ll                                                s+    + +++L  +++l+Pk
  KHN11729.1 140 NLENLDPEKLPIKKGEPLAISSVLQLHSLLatdddnemvkmrrgtgqrmfpemlakpkkkkvvnpspdsalspfspCPSH----KMESFLYGLWKLQPK 234
                 789****************************************************************9999864333333....3677*********** PP

        GRAS 238 vvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                 v+v++eqe++  n++s+ +r+ +al++ys+lfd+lea+ +r+se r+ +E++llg+ei+n+vaceg er+erhe+l +W
  KHN11729.1 235 VMVITEQESNVnNGSSLTKRVGSALKFYSTLFDCLEASTSRTSERRSLMEKMLLGEEIRNIVACEGVERKERHEKLVTW 313
                 ***********9999**************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.7571317IPR005202Transcription factor GRAS
PfamPF035148.3E-35140313IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNWDDDERIH LINLLNDCVR LTELGNFNDA YIALYHLSQL ASSDGDSMQR VATYFIEALA  60
YCQVVKNLSG VPKVLHLVKT LSTPEQQLVK KLFFDFYPFI KIAHTITNQA IIEAMKGETS  120
INVLDLSPSY NALQWTNLMN LENLDPEKLP IKKGEPLAIS SVLQLHSLLA TDDDNEMVKM  180
RRGTGQRMFP EMLAKPKKKK VVNPSPDSAL SPFSPCPSHK MESFLYGLWK LQPKVMVITE  240
QESNVNNGSS LTKRVGSALK FYSTLFDCLE ASTSRTSERR SLMEKMLLGE EIRNIVACEG  300
VERKERHEKL VTWIPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-22530313311Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181551.10.0scarecrow-like protein 3
TrEMBLA0A445J4M50.0A0A445J4M5_GLYSO; Scarecrow-like protein 3
STRINGGLYMA09G35876.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1632579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-63scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]