PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11875.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21429.7 Da    PI: 8.9625
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11875.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.6e-141143335
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaev 35
                i n+++r +tf kR++ ++KKAeEL +LC++e+
  KHN11875.1 11 IANNTKRITTFRKRKKSLMKKAEELNTLCGIEA 43
                89*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-8154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.951144IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-15292IPR002100Transcription factor, MADS-box
CDDcd002665.00E-18243No hitNo description
PRINTSPR004042.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-121143IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGRKKVKLAL IANNTKRITT FRKRKKSLMK KAEELNTLCG IEASRPELDQ GRKKVNQESF  60
VSQSIVKGQD RLQKVVKENK EIEMSSFMSQ CLNIGNVQPC KNMTTADLNV LSSMIEQDLM  120
DVDKRMEMLN CNQLETPSQL QMQTTPTYKP DMQTLANQPG DQMQTLENQP DMQTLTNQLG  180
DQMQNLAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLALIANNTKRITTFRKRK
22125RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357390.0AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186497.11e-132agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-22AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0B2PS571e-133A0A0B2PS57_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G30630.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3598422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-22AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]