PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11882.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 323aa    MW: 37123 Da    PI: 8.2963
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11882.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-131051243
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                +i n+s+r+    kR++ +lKK eELS LC++e++ i+++++
  KHN11882.1 10 FIGNDSKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPD 51
                7999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.456149IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-13160IPR002100Transcription factor, MADS-box
CDDcd002661.49E-23285No hitNo description
SuperFamilySSF554553.4E-18495IPR002100Transcription factor, MADS-box
PfamPF003193.0E-131051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAPGKLKLTF IGNDSKRKNV CKKRKQSLLK KTEELSMLCG VEACAIVYGP DDPRPVIWPS  60
ELGVENVLRM FMSMPHWEQS KKMVNQESFI AQSIMKSKEK LQKIVKENKD IEMSLFMAHC  120
FKTGMFQPDI NMTTADMNVL SSIIEQNLKD IDKRMEMLKA NQVIPNQPDV ETSTLQPQIM  180
HTLTYQPPMQ TFSFQPRIQI PEFQTQIQTP EFPTQTYQSK MQTQTFQPQM QSPALFQPRM  240
QSLAFFQPQI MQTPSYQPQI MQTPSYQPQI MQTPSYQPHM QTPALEDMTL LNYGNGSGMQ  300
MQQFNGNGYE TTMLAFGGAN FPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357390.0AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186493.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0B2PWH70.0A0A0B2PWH7_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G30482.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3681922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-37AGAMOUS-like 80
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]