PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN11898.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 96aa MW: 10899.3 Da PI: 4.579

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11898.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.7	4.5e-15	1	57	45	101
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +l+++p re+a++sl++eA++r++dPvyG++g+i+kl +q+++++ la++++++ KHN11898.1 1 MLQQIPSYLREQAANSLYFEAQCRIQDPVYGCAGIISKLYEQINSTEIALAHVQTQI 57 78999999******************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.628	1	57	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-13	1	54	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MLQQIPSYLR EQAANSLYFE AQCRIQDPVY GCAGIISKLY EQINSTEIAL AHVQTQIACQ 60 KLQVPQAKAE SNFNVFPAQN SSTAEFQWES QVPWFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006595718.1	2e-64	LOB domain-containing protein 24
Refseq	XP_028201029.1	2e-64	LOB domain-containing protein 24-like
Swissprot	P59467	7e-15	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	6e-15	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A445H0F8	4e-63	A0A445H0F8_GLYSO; LOB domain-containing protein 24
TrEMBL	K7M4H2	4e-63	K7M4H2_SOYBN; Uncharacterized protein
STRING	GLYMA14G02440.2	6e-64	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-17	LOB domain-containing protein 24

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]