PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11951.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27883.5 Da    PI: 9.5489
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11951.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.5e-312574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  KHN11951.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 74
                79***********************************************8 PP
2K-box109.53.7e-36941895100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + +s++ea+++ +qqe++kLk++i+ +q+ +Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+e l++ ie +qk+e elq++n+ Lr+k++e
  KHN11951.1  94 NPESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAE 189
                 345599***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-401776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2071777IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-331893IPR002100Transcription factor, MADS-box
CDDcd002652.04E-441892No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-331939IPR002100Transcription factor, MADS-box
PfamPF003191.0E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-335475IPR002100Transcription factor, MADS-box
PfamPF014867.2E-26100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.735103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEFPNEAIPE GCSQKKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSSRGRL YEYANNSVRG TIDRYKKACA ASTNPESVSE ANTQFYQQEA SKLKRQIRDI  120
QNLNRHILGE ALSSLSLKEL KNLESRLEKG LSRVRSRKHE TLFADIEFMQ KREIELQNHN  180
NFLRAKIAEH EKAQQRQQDM IPGNVCESTI PPQSYDRNFF PVNLIDSNNQ YSNQDQTALQ  240
LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A7e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B7e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C7e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D7e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312740.0KT031274.1 Glycine max clone HN_CCL_16 MADS transcription factor (Glyma14g03100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304521.11e-180agamous-like MADS-box protein AGL1
RefseqXP_028199250.11e-180agamous-like MADS-box protein AGL5 isoform X1
SwissprotQ93XH41e-124MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445H0R01e-179A0A445H0R0_GLYSO; Agamous-like MADS-box protein AGL5 isoform B
TrEMBLI1M6W31e-179I1M6W3_SOYBN; MADS transcription factor
STRINGGLYMA14G03100.11e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]