PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11968.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 335aa    MW: 37960.5 Da    PI: 7.4779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11968.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.3e-33188245259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v++tYeg+Hnh+
  KHN11968.1 188 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCGVKKRVERSFQDPTIVITTYEGQHNHH 245
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-35172247IPR003657WRKY domain
SuperFamilySSF1182906.67E-29180247IPR003657WRKY domain
PROSITE profilePS5081132.156182247IPR003657WRKY domain
SMARTSM007742.3E-38187246IPR003657WRKY domain
PfamPF031064.8E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MENEKDRFYD PFHYNHHHDQ QLNHSSSSFP FFRDNNNNSA PIGSQLNFQG FDDHNNPSSH  60
HHTTFTDCLH GSMDYNTLSR AFDMSCSSSE VISSNIVENP KKPSAGGDSV GVSGNQQSTP  120
NSSVSSSSNE AEAIIEEDST KSQKDKQPKG CEEGDEKSKK ENKPKKKEKK PREPRFSFLT  180
KSEIDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTSQKCGV KKRVERSFQD PTIVITTYEG  240
QHNHHCPATL RGSAASMLSS PSFFGSSYMA SSLPQDFLAQ LLPSYSQNDH QNPMFNQNLS  300
HNLHPQPQQQ QQFQLSRDYG LLQDLLPSFP GKQVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-271802481078Probable WRKY transcription factor 4
2lex_A3e-271802481078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162169KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545146.10.0WRKY transcription factor 71
RefseqXP_028199167.10.0WRKY transcription factor 71-like
TrEMBLA0A445H0U00.0A0A445H0U0_GLYSO; WRKY transcription factor 28
TrEMBLI1M6Y00.0I1M6Y0_SOYBN; Uncharacterized protein
STRINGGLYMA14G03280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-48WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]