PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11983.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 312aa    MW: 36073.5 Da    PI: 8.1274
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11983.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-50221492128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLpk  + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++    +e
  KHN11983.1  22 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLPKVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVrePQE 119
                 69***************************.89***************8777899**************************************9854556 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  KHN11983.1 120 CIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149
                 6***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5519180IPR003441NAC domain
PROSITE profilePS5100553.37321181IPR003441NAC domain
PfamPF023654.7E-2523149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDVAKLHNSD DDDDKKEEEV VLPGFRFHPT DEELVGFYLR RKVEKKPLRI ELIKQIDIYK  60
YDPWDLPKVS SVGEKEWYFF CIRGRKYRNS IRPNRVTGSG FWKATGIDKP IYCVREPQEC  120
IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PNGKTSNNPQ ANDANDVQEA EVWTLCRIFK  180
RVPTYKKYTP NLKDSAAPIT EPNHPTNSSS SKTCSLESDN CKPYLTFTNS SSPQLILQNE  240
RKPIINGHVD VERNHLFLGQ LGNVAQAPSF WNHHQNNNVE FANENWDDLT SVVQFAIDPS  300
RVSDHSKEFN RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4871873171NO APICAL MERISTEM PROTEIN
1ut4_B1e-4871873171NO APICAL MERISTEM PROTEIN
1ut7_A1e-4871873171NO APICAL MERISTEM PROTEIN
1ut7_B1e-4871873171NO APICAL MERISTEM PROTEIN
4dul_A1e-4871873171NAC domain-containing protein 19
4dul_B1e-4871873171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN11983.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0955300.0BT095530.1 Soybean clone JCVI-FLGm-15A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199811.10.0transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK553e-95NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A445H0T60.0A0A445H0T6_GLYSO; Transcription factor JUNGBRUNNEN 1
STRINGGLYMA14G03441.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-96NAC domain containing protein 42
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]