PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12039.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 255aa    MW: 29748.8 Da    PI: 9.03
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12039.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35111022102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw +++++fvv  + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+ll++i+
    KHN12039.1  11 FLTKTYQLVDDPRTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADR---------WEFANEYFRKGAKHLLCEIH 98 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN12039.1  99 RRKT 102
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-38395IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-567100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-338100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-3211100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MESHKSVPAP FLTKTYQLVD DPRTDHIVSW GDDETTFVVR RPPEFARDLL PNYFKHNNFS  60
SFVRQLNTYG FKKVAADRWE FANEYFRKGA KHLLCEIHRR KTPHHYQQHY HMHDQPPHLL  120
QPEENMCWID TPPLPSPKPG IDILTALSED NQRLRRKNLM LLSELTHMKN LYNDIIYFIQ  180
NHVSPASYDE QRSRSAILKL LELDSSPNVI RPAKSRITEK SLGTSSDEPN SSVKLFGVPL  240
CGKKRLHPGN LDQRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-20110211122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925440.0BT092544.1 Soybean clone JCVI-FLGm-11O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199892.10.0heat stress transcription factor B-4b-like
SwissprotQ9C6351e-85HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A445H1100.0A0A445H110_GLYSO; Heat stress transcription factor B-4
STRINGGLYMA14G04070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-84heat shock transcription factor B4
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]