PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12378.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 21826.4 Da    PI: 8.8326
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12378.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienks rq+tfskRrng++KKA ELS+LCda+va++ifsstgklye +
  KHN12378.1  9 KRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELC 58
                79*********************************************966 PP
2K-box34.86.8e-13991513284
       K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 q  +Rh+   +Le Ls+ +L++Le+  + +l++iRs K++l++e++ +l+kk 
  KHN12378.1  99 QMIKRHFGVSELEHLSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKV 151
                 6667888889*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.07E-29176IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
CDDcd002657.00E-35277No hitNo description
PRINTSPR004046.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.03181166IPR002487Transcription factor, K-box
PfamPF014869.2E-1082151IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGKKKVEIKR IENKSTRQIT FSKRRNGLMK KARELSILCD AKVALLIFSS TGKLYELCNG  60
DSLAEVVQQY WDHLGASGTD TKELCFEIAD IWSGSAFSQM IKRHFGVSEL EHLSVSDLME  120
LEKLTHAALS RIRSAKMRLM MESVVNLKKK VCNCFRLLQI EALEKTNDVN NVVTRSIDCD  180
QTDGVTHNLF PGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18173172MEF2C
5f28_B2e-18173172MEF2C
5f28_C2e-18173172MEF2C
5f28_D2e-18173172MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6366090.0HQ636609.1 Glycine max agamous-like 3 protein (AGL3L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241059.11e-129agamous-like MADS-box protein AGL3-like
RefseqXP_028243466.11e-129protein MADS AFFECTING FLOWERING 5-like
TrEMBLA0A445JCT21e-127A0A445JCT2_GLYSO; Agamous-like MADS-box protein AGL3 isoform A
TrEMBLG3E7M71e-127G3E7M7_SOYBN; Agamous-like 3 protein
STRINGGLYMA08G11110.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.43e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]