PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12421.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 583aa    MW: 65759.8 Da    PI: 4.8397
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12421.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24203256155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  KHN12421.1 203 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 256
                 68*******************.9*******************************8 PP
2Response_reg78.13e-26211291109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l+k  y ev+++  ++eal++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    KHN12421.1  21 VLVVDDDLTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 115
                   89*********************.***************888889**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    KHN12421.1 116 DYLLKPIRMKELRN 129
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.3E-1442581IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3418143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.3E-4318160No hitNo description
SMARTSM004483.6E-3119131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.04420135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2321130IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.53E-2922135No hitNo description
SuperFamilySSF466893.94E-17201260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21203256IPR006447Myb domain, plants
PfamPF002491.8E-7205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDNGCFSSSP RHDAFPAGLR VLVVDDDLTW LRILEKMLKK CLYEVTTCCL ATEALKKLRE  60
RKDAYDIVIS DVNMPDMDGF KLLEQVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELRNI WQHVFRKRMH EARDFESHEG FDFEGIHLMR NGSDHSDDGN LFAVEETTSI  180
KKRKDADNKH DDKEFGDHFP TKKARVVWSV DLHQKFVKAV NQIGFDKVGP KKILDLMNVP  240
WLTRENVASH LQKYRLYLSR LQKENDQKSS SSGIKHSDSP SKDLGSFSFL NTANKQQNDI  300
ATDSFSYSDG TLLIQMDATS YEGDLKGIVS EPTTEKIRAS TSEIPDPKVQ KSSQKSLNKP  360
FTSVESSEAN HAVFDCTIPT EYSWSEFPKG PLKEEQKTPV QLEDSLCQLP LHGTQHHIQI  420
DQSQSIASIN SNPSITEEEV AAKLETKPLY AGYESDYVNP VSSIGSAVEA FPSQSKSLMV  480
SDQSSEPTFT SNLSLKTQGF NLDCISDLDF YQRNLLLGGE VASAPLDEDL NFFLLQSECY  540
NMNFGLQNID MSEYYDPRLT AEVPSHFYDS ADYSSVDQSL FIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-17202261463ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245355.10.0two-component response regulator ARR11-like isoform X1
TrEMBLA0A445JCQ90.0A0A445JCQ9_GLYSO; Two-component response regulator
STRINGGLYMA05G27670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-116response regulator 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]