PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12445.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 468aa    MW: 51525.1 Da    PI: 7.9688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12445.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.55.6e-39501982136
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas........nsssg... 88 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL++ a  ai el+++++ + +   ++++++++++            +   
  KHN12445.1  50 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAISELPSLNNFPDTPQsDDHEKRENTAdvavgvvdG---Engn 145
                 689*************************************************************5555533323333333333244444441...0445 PP

         TCP  89 ...kaaksaakskksqksaasalnlak.esrakararare.rtrekmriknkl 136
                     + +++a+s++s++s+ s l+l++ + r kar+rare  t+ek + k+k+
  KHN12445.1 146 gqnLSLAKSACSSNSETSKGSGLSLSRsDIRVKARERARErTTKEKEKEKEKN 198
                 5656677777999999999999*****999**********5566666666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.2E-4051193IPR005333Transcription factor, TCP
PROSITE profilePS5136931.02852110IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384173191IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEEEDEILQA RACKLPRRRG SDGESTNSRF HSSSWHHHNS SRIIRVSRAS GGKDRHSKVM  60
TSKGLRDRRV RLSVTTAIQF YDLQDRLGYD QPSKAVEWLI KSASDAISEL PSLNNFPDTP  120
QSDDHEKREN TADVAVGVVD GENGNGQNLS LAKSACSSNS ETSKGSGLSL SRSDIRVKAR  180
ERARERTTKE KEKEKEKNDE SHRHHHNVVV VPHHNHNVNL VSQTASFTEL LTGSDPNKGC  240
DEANNNMMFN KAAGRLQWCS STTPMDYFLG LSSSRTTTHN HNHLHHHQYS SSSSSGFSLA  300
QIQLGHSLPE AMNHVSAFNN NVSGDNHNHS SSDPHLQQQH LSLIPDHLMS AVVTSSAASS  360
HHHHHQPSGN DYNLNSTMSS GLAGYNRGTL QSNSPSLLPH SQRFSPIDGS TVPFFIGAAS  420
SAAAVAAPAM ENNNNNNNHH QHQFSSVFDG SRLQLYYGHS DQKGKAKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2457111155Putative transcription factor PCF6
5zkt_B9e-2457111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-64AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243364.10.0transcription factor TCP2-like
RefseqXP_028243365.10.0transcription factor TCP2-like
RefseqXP_028243366.10.0transcription factor TCP2-like
RefseqXP_028243367.10.0transcription factor TCP2-like
RefseqXP_028243369.10.0transcription factor TCP2-like
RefseqXP_028243370.10.0transcription factor TCP2-like
RefseqXP_028243371.10.0transcription factor TCP2-like
RefseqXP_028243372.10.0transcription factor TCP2-like
TrEMBLA0A445JC940.0A0A445JC94_GLYSO; Transcription factor TCP2 isoform A
STRINGGLYMA08G10350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-50TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]