PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN12708.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 97aa    MW: 11136.5 Da    PI: 7.6641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN12708.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07651346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WTt   +++ +a + +  +    Wk   r +g g+t +++k ++ +
       KHN12708.1  6 AWTTKQNKKFENALAIYDREtpdLWKNLVRAVG-GKTVEEVKRHYEM 51
                     8*****************88*************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-5355IPR001005SANT/Myb domain
CDDcd001677.91E-5653No hitNo description
Gene3DG3DSA:1.10.10.602.3E-4659IPR009057Homeodomain-like
SuperFamilySSF466896.61E-11760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSAWTTK QNKKFENALA IYDRETPDLW KNLVRAVGGK TVEEVKRHYE MLVDDLKQIE  60
EGHVPLPNYR NVAATGGSSI RGYSYMEEEQ RLKSNPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-28278679RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN12708.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150367e-97AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545280.11e-59protein RADIALIS-like 4 isoform X1
RefseqXP_028198407.11e-59protein RADIALIS-like 4 isoform X1
SwissprotF4JVB85e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445H2R23e-58A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A
TrEMBLK7M5F63e-58K7M5F6_SOYBN; Uncharacterized protein
STRINGGLYMA14G08101.15e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]