PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN12906.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 723aa MW: 82977.1 Da PI: 6.7799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN12906.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.4	1.5e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w+vt +++ HnHel KHN12906.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFRNIHNHELL 152 6*************9998874556679***************9***************99998776789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.8E-7	294	332	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.742	519	552	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.5E-7	524	549	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.9E-7	527	554	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MSEGTSLVLE SSENGTDLSQ DDIGTIEEIP EETILSRQTS VNLVPFIGQR FVSQEAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QIKPSDDGKV QRNRKSSRCG 120 CQAYMRIVKR SDFDVPEWRV TGFRNIHNHE LLKSNEVHLL PAYCPISPDD KGRICMFAKA 180 GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENH 240 NFKYEFKIDS NNRLEHIAWS YSSSIQSYEA FGDAVVFDTT YRVEAYDMAF LGFMKGKAPQ 300 TILTDHNMWL KEAIAVELPE TKHGFCIWHI LSKFSDWFSL FLGSQYDEWK AEFHRLYNLE 360 LVEDFEEGWR QMVDQYGLHA NKHIISLYSL RTFWALPFLR RYFFAGLTST CQSESINAFI 420 QRFLSAQSQL DRFVEQVVEI VDFNDRAGAK QKMQRKLQKV CLKTGSPIES HAATVLTPDA 480 LSKLQEELVL APQYASFLVD EGRFQVRHHS QSDGGCKVFW VPCQEHISCS CHLFEFSGIL 540 CRHVLRVMST NNCFHIPDQY LPARWRGNNS SSVNHYRGTT SRDQPERIQF LESMVSTFLV 600 ESIETEERLD VACDQISMVL SRIKTFPRSP HGVNDIAYSY PSDSLILPEV EDTDGMIPGF 660 TITNPHDSIT TGKLKERRAR DVVDLTRKRR QFSMPLCAQY GHDASDCSIM ASDNMSGDAL 720 GYL

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MSEGTSLVLE SSENGTDLSQ DDIGTIEEIP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QIKPSDDGKV QRNRKSSRCG  120
CQAYMRIVKR SDFDVPEWRV TGFRNIHNHE LLKSNEVHLL PAYCPISPDD KGRICMFAKA  180
GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENH  240
NFKYEFKIDS NNRLEHIAWS YSSSIQSYEA FGDAVVFDTT YRVEAYDMAF LGFMKGKAPQ  300
TILTDHNMWL KEAIAVELPE TKHGFCIWHI LSKFSDWFSL FLGSQYDEWK AEFHRLYNLE  360
LVEDFEEGWR QMVDQYGLHA NKHIISLYSL RTFWALPFLR RYFFAGLTST CQSESINAFI  420
QRFLSAQSQL DRFVEQVVEI VDFNDRAGAK QKMQRKLQKV CLKTGSPIES HAATVLTPDA  480
LSKLQEELVL APQYASFLVD EGRFQVRHHS QSDGGCKVFW VPCQEHISCS CHLFEFSGIL  540
CRHVLRVMST NNCFHIPDQY LPARWRGNNS SSVNHYRGTT SRDQPERIQF LESMVSTFLV  600
ESIETEERLD VACDQISMVL SRIKTFPRSP HGVNDIAYSY PSDSLILPEV EDTDGMIPGF  660
TITNPHDSIT TGKLKERRAR DVVDLTRKRR QFSMPLCAQY GHDASDCSIM ASDNMSGDAL  720
GYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	685	690	TRKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN12906.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028180989.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0B2PUA0	0.0	A0A0B2PUA0_GLYSO; Protein FAR1-RELATED SEQUENCE 11
STRING	GLYMA09G04394.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]