PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13024.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 169aa    MW: 19314.1 Da    PI: 9.0866
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13024.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-192478256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  KHN13024.1 24 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 78
                78889************************************************98 PP
2HD-ZIP_I/II126.71e-4024113191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
   KHN13024.1  24 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 113
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.6532080IPR001356Homeobox domain
SuperFamilySSF466894.28E-192288IPR009057Homeodomain-like
SMARTSM003891.0E-152284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-182478IPR009057Homeodomain-like
CDDcd000866.61E-162481No hitNo description
PfamPF000461.2E-162478IPR001356Homeobox domain
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PfamPF021834.1E-1080114IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-2480123IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEVDAEERVS SRVSDEDEDG TNARKKLRLT KEQSALLEES FKQHSTLNPK QKQALARQLN  60
LRPRQVEVWF QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLKKELQEL KALKLAQPLY  120
MPMPAATLTM CPSCERLGGV SDNGSNKSPF SMAPKPHFYN PFANPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0994350.0BT099435.1 Soybean clone JCVI-FLGm-23N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346165.11e-121transcription factor ABIG1-like protein
RefseqXP_028191847.11e-121homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-88HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0B2PZB41e-121A0A0B2PZB4_GLYSO; Homeobox-leucine zipper protein HAT22
TrEMBLA0A445HX011e-120A0A445HX01_GLYSO; Homeobox-leucine zipper protein HAT22
TrEMBLI1LH341e-120I1LH34_SOYBN; Uncharacterized protein
STRINGGLYMA11G04840.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-79HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]