PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN13129.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 249aa MW: 27316.5 Da PI: 9.5803

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN13129.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.9	1.3e-25	8	63	5	59
S-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++ rKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ KHN13129.1 8 CHCRKYGQKMGKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 63 677*******************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	1.1E-26	4	64	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.6E-25	7	65	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-21	7	65	IPR003657	WRKY domain
Pfam	PF03106	1.0E-21	7	63	IPR003657	WRKY domain
PROSITE profile	PS50811	25.144	11	65	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRKYGGCHC RKYGQKMGKG NPCPRAYYRC TASPSCPVRK QVQRCAEDMS ILITTYEGTH 60 NHPLPMSAIA MACKTSATAS MLQSPSLSSQ HGLVDSAISS IINSSARYYN PNNALNFSTH 120 QVSRPQQFYF PNSSISTLNS HPTITLDLTT PPTSSSNSSF TCMPKYSSTN LNFSSGFSPL 180 HSSMPQSPWN RYSGYSNSGT LYQNRHQGGN YMLNTGNQNQ PHSLGHLNQP IYMSNNSTIS 240 QTNEVKVAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-18	7	65	17	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN13129.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014619828.1	1e-143	probable WRKY transcription factor 61
Refseq	XP_028193397.1	1e-143	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	9e-40	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A0B2PZL9	0.0	A0A0B2PZL9_GLYSO; Putative WRKY transcription factor 42
STRING	GLYMA10G14610.2	1e-146	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	2e-38	WRKY family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]