PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13167.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 119aa    MW: 13519.2 Da    PI: 9.6743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13167.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.37e-22253256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+++AeIrdps++g   r +lg+f+taeeAa+a+++a+ +l+g+
  KHN13167.1  2 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 53
                59*******.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.8E-33261IPR001471AP2/ERF domain
CDDcd000184.35E-31260No hitNo description
PfamPF008471.0E-15253IPR001471AP2/ERF domain
SMARTSM003801.6E-38266IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-24261IPR016177DNA-binding domain
PROSITE profilePS5103225.014260IPR001471AP2/ERF domain
PRINTSPR003675.1E-12314IPR001471AP2/ERF domain
PRINTSPR003675.1E-122642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MRYRGVRRRP WGKYAAEIRD PSKQGSRLWL GTFDTAEEAA RAYDRAAFNL RGHLAILNFP  60
SEYYSQIRGS PPYPPHLATP SSSSGAQQRP VFEIPCLDDK VLEDLLGQSE EHKKKNKGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-31210114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-37AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220080.16e-85ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A445F8181e-83A0A445F818_GLYSO; Ethylene-responsive transcription factor ERF098
STRINGGLYMA20G34560.11e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-38ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]