PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13717.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 381aa    MW: 43624.6 Da    PI: 8.1978
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13717.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.34.9e-106237742373
        GRAS  42 aayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp 140
                 ++yf eAL  r+ ++ +++yk+l+ps+ts   sse + ++k+f++++P+lkfs+l++N+aI ea+e e+ vHi+D+   +++QW+ Ll ++ +R++gpp
  KHN13717.1   2 VTYFSEALGYRIIKNLPGVYKSLNPSKTS--LSSEDILVRKYFYKLCPFLKFSYLITNHAIAEAMECEKVVHIVDLHCCEPTQWIDLLLTFKNRQGGPP 98 
                 78***********************9998..79****************************************************************** PP

        GRAS 141 slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......................... 214
                 +l+iTg+++    +ke l +++  L+  A +l+ p++f + v+++led+++e+L vk g+ala+ +vlqlh+ll                         
  KHN13717.1  99 HLKITGIHE----KKEVLDQMNFHLTTEAGKLDFPLQFYP-VVSKLEDVDFEKLPVKIGDALAITSVLQLHSLLatdddmagrispaaaasmnvqralh 192
                 *********....9**************************.799******************************************************* PP

        GRAS 215 ...............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                  s +       +L+++++l+Pk+vv++eqe+++n+++++er+ +al++ysalfd+l++++ ++s er
  KHN13717.1 193 mgqrtfaewlerdminaytlspdsalsplslGASPK----MGIFLNAIRKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMKTSVER 287
                 **********************99977644444444....566******************************************************** PP

        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 +k+E +llg++i+n++aceg +r+erhe+lekW +rle+aGF++vpls++   +ak ll++++++ y+  ee+++l+ +W+drpL+svSaW
  KHN13717.1 288 QKLESKLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEMAGFEKVPLSYNGRLEAKNLLQRYSNK-YKFREENDCLLVCWSDRPLFSVSAW 377
                 ***************************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.1381359IPR005202Transcription factor GRAS
PfamPF035141.7E-1032377IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVTYFSEALG YRIIKNLPGV YKSLNPSKTS LSSEDILVRK YFYKLCPFLK FSYLITNHAI  60
AEAMECEKVV HIVDLHCCEP TQWIDLLLTF KNRQGGPPHL KITGIHEKKE VLDQMNFHLT  120
TEAGKLDFPL QFYPVVSKLE DVDFEKLPVK IGDALAITSV LQLHSLLATD DDMAGRISPA  180
AAASMNVQRA LHMGQRTFAE WLERDMINAY TLSPDSALSP LSLGASPKMG IFLNAIRKLQ  240
PKLVVITEQE SNLNGSNLME RVDRALYFYS ALFDCLDSTV MKTSVERQKL ESKLLGEQIK  300
NIIACEGVDR KERHEKLEKW IRRLEMAGFE KVPLSYNGRL EAKNLLQRYS NKYKFREEND  360
CLLVCWSDRP LFSVSAWSFR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-45138059381Protein SCARECROW
5b3h_A9e-45138058380Protein SCARECROW
5b3h_D9e-45138058380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13717.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028228817.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-131SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0B2Q1Q60.0A0A0B2Q1Q6_GLYSO; Scarecrow-like protein 3
STRINGGLYMA04G28490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-131scarecrow-like 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]