PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13875.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 164aa    MW: 18008.4 Da    PI: 9.0326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13875.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00132850123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  KHN13875.1 28 FECKTCNRQFPSFQALGGHRASH 50
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-82697No hitNo description
PfamPF139122.6E-132752IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8272855IPR007087Zinc finger, C2H2
SMARTSM003550.162850IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139125.5E-107499IPR007087Zinc finger, C2H2
PROSITE profilePS501579.07875102IPR007087Zinc finger, C2H2
SMARTSM003550.57597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MANCLMLLSR GSEFEATYSS TSMSNRVFEC KTCNRQFPSF QALGGHRASH KKPRLMAGDI  60
EGQLLHDSPP KPKTHECSIC GLEFAIGQAL GGHMRRHRAA NLNGNVHNST ATSSSSGGSS  120
FDSSPKKKAD NKRVLVLDLN LTPFENDLEF LKIGKPTTFV DYLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0912950.0BT091295.1 Soybean clone JCVI-FLGm-7L1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552680.11e-120zinc finger protein ZAT11
RefseqXP_028213105.11e-120zinc finger protein ZAT11-like
TrEMBLA0A445FYY01e-119A0A445FYY0_GLYSO; Zinc finger protein ZAT11
TrEMBLI1N5341e-119I1N534_SOYBN; Uncharacterized protein
STRINGGLYMA18G52410.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-36C2H2 family protein