PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13933.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 212aa    MW: 24495.9 Da    PI: 7.1767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13933.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.12.5e-0756139790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                 A+e GF  ++ +s ++  + g+       C ++ + + +k++    rr + + ++gC  kl+ k+    + w+v+ + + HnHel+
  KHN13933.1  56 AHENGFVAVIMRSDTHtGNRGRSSFVLIGCEMSDQYKCRKNE--FVRRDTGSRKCGCPFKLRGKQVIgGQSWMVKLICEIHNHELV 139
                 8999**999988877724445555555669999998888877..8999999************9999899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-456139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDEDQWTYDN TMFQEVDMDY ENEQEYGLNE PHVDCSDAFN TSQVFGYVLQ WARSVAHENG  60
FVAVIMRSDT HTGNRGRSSF VLIGCEMSDQ YKCRKNEFVR RDTGSRKCGC PFKLRGKQVI  120
GGQSWMVKLI CEIHNHELVK SLVGHPYSRR LTKDEKTIIA DMTKSMSMVK PRNILLTLKE  180
HNANSCKLSN KYTMQEVHTV LPLEEVIPKC NM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354440.0AC235444.1 Glycine max strain Williams 82 clone GM_WBb0158O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202184.11e-125uncharacterized protein LOC114386380
TrEMBLA0A0B2Q1S61e-160A0A0B2Q1S6_GLYSO; Uncharacterized protein (Fragment)
STRINGGLYMA15G18460.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]