PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13937.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 179aa    MW: 20580.9 Da    PI: 10.4819
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13937.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.9e-182773649
                HHHHHHHHH...HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  6 ksnrqvtfs...kRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +n  vtfs   kRr+g++KKA+EL +LC+++vavi+fs+ ++++ +
  KHN13937.1 27 MRNERVTFSklsKRRTGVFKKASELATLCGVDVAVIMFSPGNRVFSF 73
                5688899853337******************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.7871777IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-241776IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-231899IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-131939IPR002100Transcription factor, MADS-box
PfamPF003191.2E-182773IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-133954IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-135475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MESNNMPDLN GVAKKTKGRQ KIEMKKMRNE RVTFSKLSKR RTGVFKKASE LATLCGVDVA  60
VIMFSPGNRV FSFGSPSVDS VVQRYKTQGP PPLLTLDLNK VHSTVDEVEL HTHLHCLSNQ  120
IAIEKKRTKD LNHLAKAAED QFWWARPIES MTDSQLDKYK TTQRKKTWEP QLMMPYLKF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589896.11e-111agamous-like MADS-box protein AGL62
RefseqXP_028184649.11e-111agamous-like MADS-box protein AGL62
TrEMBLA0A0B2Q2B61e-132A0A0B2Q2B6_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G10860.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-36AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]