PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN13973.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 156aa    MW: 17898.9 Da    PI: 8.9414
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN13973.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74e-08941262254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  +yp++e++++L +++gL+ +q+ +WF N+R +
  KHN13973.1  94 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 126
                 69*****************************87 PP
2ELK31.15.2e-114768122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                ELKh+L+++Y+ +++++++E++
  KHN13973.1 47 ELKHELKQGYKDKIVDIREEIL 68
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011885.1E-44768IPR005539ELK domain
PfamPF037893.8E-64768IPR005539ELK domain
PROSITE profilePS512139.9694767IPR005539ELK domain
PROSITE profilePS5007111.61267130IPR001356Homeobox domain
SuperFamilySSF466891.15E-1669133IPR009057Homeodomain-like
SMARTSM003891.2E-1069134IPR001356Homeobox domain
CDDcd000861.12E-1070131No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2574131IPR009057Homeodomain-like
PfamPF059202.6E-1887126IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MSDDEEDQAE SNANLFEGSM DGADSLSFGP LVPTETERSL MERVRQELKH ELKQGYKDKI  60
VDIREEILRK RRAGKLPGDT TSLLKAWWQS HSKWPYPTEE DKARLVQETG LQLKQINNWF  120
INQRKRNWHT NPSSSSGSKS KRKSSGAGET SNQSFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-1370134872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN13973.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014623630.11e-110homeobox protein knotted-1-like 2 isoform X1
RefseqXP_028203848.11e-110homeobox protein knotted-1-like 2 isoform X1
SwissprotP480016e-87KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0B2Q1W01e-111A0A0B2Q1W0_GLYSO; Homeobox protein knotted-1-like 4
TrEMBLA0A0R0GC111e-109A0A0R0GC11_SOYBN; Uncharacterized protein
TrEMBLA0A445GW891e-109A0A445GW89_GLYSO; Homeobox protein knotted-1-like 3 isoform A
STRINGXP_007138444.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.28e-83KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]