PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14074.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 501aa    MW: 54295 Da    PI: 4.8399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14074.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.3e-09157179426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C f+ +tG Ck+G +CkF+H+
  KHN14074.1 157 EDCAFYIKTGNCKFGFNCKFNHP 179
                 89********************8 PP
2zf-CCCH28.23.2e-09203225325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 + +C++++r+G Ck+G +Ck++H
  KHN14074.1 203 MTECKYYQRSGGCKFGKSCKYNH 225
                 679******************** PP
3zf-CCCH41.91.6e-13250274226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG Ck+G++CkF+H+
  KHN14074.1 250 GERECPYYMRTGSCKFGANCKFNHP 274
                 5799********************9 PP
4zf-CCCH309.2e-10387413127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f++tG Ck+ ++CkF+H++
  KHN14074.1 387 PGEPECSYFLKTGDCKFKSNCKFNHPK 413
                 5799*********************96 PP
5zf-CCCH35.61.6e-11434458226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C++++r+G+Ck+G+ CkF H+
  KHN14074.1 434 DQSVCSHYSRYGICKFGPACKFDHP 458
                 5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5152181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873153181IPR000571Zinc finger, CCCH-type
SMARTSM003560.0052153180IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6157179IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-5200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845200228IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7202225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5203230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4206227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46248276IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6248275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6249275IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-11250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5254273IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4386413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004386414IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7388413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5391415IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6430458IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577432460IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4432459IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-9434458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4437458IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGGSESVSVP LSISNGEEPQ LGASSSPAAP PEPSDLNHAA EEEALSRELQ SKLDLKDGDE  60
SEERVSDLND GRGVCDEETG KPDGDSRGWE TNSWNEEVGV DAEVHVFGDG DVHDAGDGDV  120
HDVGDGDVDV DVDDEVEKKE GGNSGLAQHY PLRPEAEDCA FYIKTGNCKF GFNCKFNHPI  180
RRKSQAVKEK AGEREETTER SGMTECKYYQ RSGGCKFGKS CKYNHTRGKI STAPAPLLEL  240
NFLGLPIRLG ERECPYYMRT GSCKFGANCK FNHPDPTAVG GVGGDPASGY GNGGSISLQG  300
VSQTSVPSWS SPRTLNEASP FVPMMLSPTQ GVSTQSSDWN GYQASVYLPE RNMHPPSTFV  360
MNNPAIDTNV YMHHQKQMPV DEFPERPGEP ECSYFLKTGD CKFKSNCKFN HPKNRVARLP  420
PCNLSDKGLP LRPDQSVCSH YSRYGICKFG PACKFDHPIN LQPVMIPGLG QQSYSNSASV  480
EVAGIFGSTG VVTDATIQQS V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549835.10.0zinc finger CCCH domain-containing protein 67
RefseqXP_028210765.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-134C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0B2Q2370.0A0A0B2Q237_GLYSO; Zinc finger CCCH domain-containing protein 43
STRINGGLYMA17G13580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]