PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14148.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 230aa    MW: 26138.4 Da    PI: 9.8112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14148.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.5e-18553148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll ++++ +G g+W+++ar+ g ++Rt+k+c++rw++yl
       KHN14148.1  5 KGPWTEQEDSLLFNYITVHGEGHWNSVARYTGsLKRTGKSCRLRWLNYL 53
                     79*********************************************97 PP
2Myb_DNA-binding50.25.9e-1659102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
       KHN14148.1  59 RGNITLQEQLLILDLHSRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 102
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.429157IPR017930Myb domain
SMARTSM007179.3E-15455IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-284100IPR009057Homeodomain-like
PfamPF002495.9E-16553IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-21660IPR009057Homeodomain-like
CDDcd001671.36E-11753No hitNo description
SMARTSM007171.1E-1358106IPR001005SANT/Myb domain
PROSITE profilePS5129418.37558108IPR017930Myb domain
PfamPF002491.9E-1459102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2161106IPR009057Homeodomain-like
CDDcd001671.08E-1063102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MLITKGPWTE QEDSLLFNYI TVHGEGHWNS VARYTGSLKR TGKSCRLRWL NYLRPNVRRG  60
NITLQEQLLI LDLHSRWGNR WSKIAEHLPG RTDNEIKNYW RTRVVKQAKQ LKCDVNSKQF  120
RDTLRFVWMP RMLERIRAQA SSSAQAHQSS LISNSNTQAH SGLLSSALHA HAPSLSDSSA  180
SYNLMGADAG SCSSHSYYSD IAGNGFGGAD LWTDQNICFL QHQLAHHDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-24310025120MYB TRANSFORMING PROTEIN
1mse_C4e-242100197C-Myb DNA-Binding Domain
1msf_C4e-242100197C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14148.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973790.0BT097379.1 Soybean clone JCVI-FLGm-16I17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242391.21e-160R2R3-type MYB transcription factor MYB12a
RefseqXP_028226355.11e-160transcription factor MYB2-like
SwissprotQ10MB42e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0B2Q2E51e-171A0A0B2Q2E5_GLYSO; Transcription factor MYB21
STRINGGLYMA03G38040.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.12e-72myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]