PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN14375.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 417aa MW: 48416.1 Da PI: 7.2084

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN14375.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.8e-21	61	144	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH l KHN14375.1 61 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 144 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-18	61	144	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	8.7E-5	287	331	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.644	299	335	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	310	337	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY 60 NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM 120 IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL 180 VIDAGGNGNS NSCAREDITF SEFSNKWNLR KALHRKHKEE SFSDIESRSS SPLLKTRCSF 240 ELQLSRMYTR EMFMKFQLEV EEVYSCFGTT QLHVDGPIII FLVKERVLIE GNRREIRDFE 300 VLYSRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP HKYILSRWKK DFKRLYVPDH 360 SSGGVNDTDR IQWSNQLFRS ALQVVEEGIL SLDHYNVALQ SLEESLSKVH DVEQRQE

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY  60
NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM  120
IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL  180
VIDAGGNGNS NSCAREDITF SEFSNKWNLR KALHRKHKEE SFSDIESRSS SPLLKTRCSF  240
ELQLSRMYTR EMFMKFQLEV EEVYSCFGTT QLHVDGPIII FLVKERVLIE GNRREIRDFE  300
VLYSRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP HKYILSRWKK DFKRLYVPDH  360
SSGGVNDTDR IQWSNQLFRS ALQVVEEGIL SLDHYNVALQ SLEESLSKVH DVEQRQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN14375.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981560.1	1e-142	uncharacterized protein LOC100796448
Refseq	XP_028204299.1	1e-142	uncharacterized protein LOC114388164
Swissprot	Q9SSQ4	8e-99	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A444ZDH7	0.0	A0A444ZDH7_ARAHY; Uncharacterized protein
STRING	GLYMA15G13150.1	1e-148	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-94	FAR1-related sequence 6

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]