PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14486.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 238aa    MW: 26522.8 Da    PI: 8.4981
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14486.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP69.51.1e-2119638129
         TCP  38 eLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrek 129
                 +LGfdk+s+t++WL++++k+aikelt+++ s+ s+     ++++ +s+ +++ ++++  + +++k ++  a ++ +++kesr+kararar+rt++k
  KHN14486.1   1 MLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfsssSEGEVVSTIHQDLHQQQGVDLEEGKLKEPAAYCVKAKMKESREKARARARQRTSSK 96 
                 8***************************66666333345344455555555555566666669999999999*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136917.958125IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-16196IPR005333Transcription factor, TCP
PROSITE profilePS5137010.3047996IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLGFDKASNT LDWLFTKSKK AIKELTRSKH SADSFEFSSS SEGEVVSTIH QDLHQQQGVD  60
LEEGKLKEPA AYCVKAKMKE SREKARARAR QRTSSKVLCN ISGEGKVQDL KKKCPATENP  120
QILNQLRSPL QPPHPQDVGG EVPRDDDFNV IEESIVIRRK LKHTLMSSIH HQNAVIPKEA  180
SVNNSDYHSF PNLSPNWEAN NNGANGRSTF CAIASMNLST GLQIFGKSWE ECTNPHPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14486.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028246905.11e-177transcription factor DICHOTOMA-like
TrEMBLA0A0B2PYU71e-178A0A0B2PYU7_GLYSO; Uncharacterized protein
STRINGGLYMA08G28691.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-08TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]