PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14496.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 177aa    MW: 20068 Da    PI: 9.4767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14496.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.91.5e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +v+++G+g+W++++++ g+ R++k+c++rw +yl
       KHN14496.1 14 KGPWTPEEDKKLVAYVEEHGPGNWRSVPAKAGLERCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.91.8e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eEd  +++++++lG++ W+ Ia++++ +Rt++++k++w++
       KHN14496.1  67 RGNFSMEEDHTIIQLHALLGNK-WSIIAAHLP-NRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129427.402965IPR017930Myb domain
SuperFamilySSF466891.05E-3311108IPR009057Homeodomain-like
SMARTSM007173.1E-161363IPR001005SANT/Myb domain
PfamPF002494.9E-191461IPR001005SANT/Myb domain
CDDcd001671.23E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2665117IPR009057Homeodomain-like
PROSITE profilePS5129420.52266116IPR017930Myb domain
SMARTSM007179.3E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1567110IPR001005SANT/Myb domain
CDDcd001672.86E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPE EDKKLVAYVE EHGPGNWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF SMEEDHTIIQ LHALLGNKWS IIAAHLPNRT DNEIKNYWNT NIKKRLIRMG  120
LDPITHKPIK SNSFEAYDEF KDTTNMGHVA QWESARLEAE ARGSILQVGS GSSNLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-30121162105C-Myb DNA-Binding Domain
1msf_C7e-30121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-49AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621940.11e-132transcription factor MYB106
SwissprotQ9LXF14e-86MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A445LMA41e-130A0A445LMA4_GLYSO; Transcription factor MYB16
TrEMBLK7K7N81e-130K7K7N8_SOYBN; Uncharacterized protein
STRINGGLYMA02G12242.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-88myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]